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When gopher mounds are present, the actual capture and morphological examination of gophers is still necessary to conclusively determine which species occupies the site, which we have confirmed can be accurately assessed by visual examination of captured animals. Map showing currently accepted ranges of Wyoming's 3 Thomomys pocket gophers as defined by the Wyoming Game and Fish Department (2010), with inset showing the approximate continental range of the species (Patterson et al. 2006). As such, monitoring populations in the face of impending changes may be important to its long-term conservation. Habitat. We compared habitat features at sites occupied by T. clusius to unoccupied sites and those occupied by the common northern pocket gopher (T. talpoides). In contrast to T. talpoides, T. clusius was more restricted to areas with Gardner's saltbush, often in combination with other moderately halophytic species typically found in relatively flat areas of fine-textured soil. Many trees and shrubs are clipped just above ground, especially under snow cover. The burrows where a pocket gopher travels feeds within are usually tunneled at a depth of 6 to 12 inches underground, while their food stores are around 6 feet deep. within the purported range of T. clusius, which includes T. idahodensis, another little-known species occurring in western Wyoming and eastern Idaho, and T. talpoides, which is common over much of the western United States and throughout the range of T. clusius (Fig. Bur… feed primarily on forbs (Keinath and Beauvais 2006). This rapid development raised concerns about potential habitat destruction, disturbance, and fragmentation; caused T. clusius to be designated a species of conservation concern by multiple state and federal agencies; and was the basis for a petition to list it under the United States Endangered Species Act (Biodiversity Conservation Alliance and Center for Native Ecosystems 2007). Version 0.7-1, Novel methods improve prediction of species' distributions from occurrence data, A statistical explanation of Maxent for ecologists, Predicting habitat suitability with machine learning models: The potential area of, The meaning and use of the area under a receiver operating characteristic (ROC) curve, The elements of statistical learning: data mining, inference, and prediction, Distribution and status of the yellow-faced pocket gopher in Kansas, Ecology of pocket gophers with emphasis on, United States Department of Agriculture, Forest Service, Rocky Mountain Region, Classification and regression by randomForest, Permutation methods: a distance function approach, NatureServe Explorer: an online encyclopedia of life (Ecological System Comprehensive Report). Illustration of Atriplex gardneri (Fig. Partial plots for all variables in the final Random Forest habitat model differentiating sites of Thomomys clusius from sites of T. talpoides. Gopher Inspection Summary. Therefore, conservation efforts for southeastern pocket gophers (e.g., habitat restoration, translocations) will need to target soils that may be a subset of those suitable for many other species of concern in Southeastern open-pine systems. Also, the variables we used to parameterize the distribution models (notably the index of Atriplex cover and soil texture) were coarse, landscape-level approximations that probably limit accuracy of the final distribution maps. Gophers, also known as “pocket gophers” are among the many types of rodents from the animal kingdom. 1984). The largest populations have been found to reside around Fort Lewis and several regional airports. The burrows are about 2½ to 3½ inches in diameter. Tunnels at sites occupied by T. clusius were narrower (median = 5.0 cm) than those of T. talpoides (median = 7.0 cm; U= 344, P < 0.001), presumably because T. clusius is a smaller-bodied animal. The distribution of captures suggests that T. clusius may be limited to eastern Sweetwater and western Carbon counties (Fig. Distribution modeling.—We modeled the distribution of T. clusius by comparing environmental characteristics at sites of known occurrence with those of known absence and randomly located background locations depending on the modeling algorithm (see below). 2009). Capture locations from Thaeler and Hinesley (1979) were not used because of their age and geographic imprecision. As such, we believe monitoring the population of T. clusius in the face of impending changes to the central Wyoming landscape is important to its long-term conservation, both as a means to identify potential impacts and understand the mechanisms behind those impacts, should they occur. Areas of model overlap (green) are considered particularly likely to contain T. clusius. First, we wanted to provide resource managers the ability to use habitat information to assess which pocket gopher species was most likely to occupy a given system of burrows. This means that their habitats must have relatively loose soil that is easy to burrow through. The plains pocket gopher is intermediate in its endurance between the southern pocket gopher and the yellow-faced pocket gopher. Heavy, black lines indicate median values. Pocket gophers usually live in rangeland, alfalfa fields, roadsides, introduced pastures, railroad rights-of-way, and they often invade lawns and flowerbeds. Version 3.3.3k, A unifying quantitative analysis of soil texture: improvement of precision and extension of scale, the Animal Care, Use Committee of the American Society of Mammalogists, Guidelines of the American Society of Mammalogists for the use of wild mammals in research, United States Geological Survey Fact Sheet 2009–3054, Bias in random forest variable importance measures: illustrations, sources and a solution, An introduction to recursive partitioning using the RPART routines, rpart: recursive partitioning. Although sampling was fairly uniform, in order to reduce potential impact of spatially biased sampling on models we filtered training data, eliminating points within 800 m of another point, preferentially retaining presence points over absence points to maximize the number of presences available for modeling. Habitat. As herbivores, pocket gophers will flock to areas that can provide the adequate tunneling room and food. If th… It was later considered a subspecies of the northern pocket gopher (T. talpoides clusius—Bailey 1915; Long 1965), although the type specimen remained the only example of the taxon in museum collections until the mid-20th century, when collectors began classifying small, light-colored gophers throughout the central Rocky Mountains as T. t. clusius. To conduct the test, we used the R implementation of MRPP in the vegan package using Bray–Curtis distances with 999 permutations (Mielke and Berry 2001; Oksanen et al. Although the extent of occurrence of T. clusius increased greatly as a result of the data reported in this study, the species still seems endemic to a very small portion of southern Wyoming. The pocket gophers burrow system will typically consist of a main burrow with a number of laterals branching off from it. The Wyoming pocket gopher (Thomomys clusius) is among the least understood species of Geomyidae. Soil composition was assessed via the hand-texture method (Thien 1979), from which estimates of average percent clay, sand, silt, and particle size were derived (Shirazi et al. D. McDonald, T. Parchman, C. Okraska, J. Pollock, J. Patton, D. Blake, P. Deibert, A. Gulka, S. Hammer, N. Petersen, G. Alba, E. Stinson, and K. Leuenberger. 1) provided by NatureServe in collaboration with B. Patterson, W. Sechrest, M. Tognelli, G. Ceballos, The Nature Conservancy— Migratory Bird Program, Conservation International—CABS, World Wildlife Fund—US, and Environment Canada—WILDSPACE. The RF model was additionally evaluated using the overall out-of-bag (OOB) error rate (Breiman 2001). A pocket gopher only eats herbivorous fare, including roots, bulbs, rhizome grasses, shrubs, the fleshy portions of plants, leaves, and plant stems. A female pocket gopher gives birth to 4 young ones in each average litter. They may also pull plants by the roots from the bottom down into their burrows to eat them within, while remaining hidden from aboveground predators. Benedix JH Jr (1993) Area-restricted search by the plains pocket gopher (Geomys bursarius) in tallgrass prairie habitat. Their adult size ranges from 5 to 14 inches, and they typically achieve weights of around 2 pounds upon the culmination of physical maturation. Dashes (—) indicate the variable was not used in the final model. 2006, 2011). Its restricted range, relative rarity, and relatively strong association with limited habitat features all suggest that T. clusius could be sensitive to habitat change (e.g., Cardillo et al. We believe that continued exploration of habitat associations with this issue in mind is an important next step that could yield useful insights into ecology of T. clusius and ultimately aid conservation efforts. within the purported range of T. clusius (i.e., T. clusius, T. idahoensis, and T. talpoides). Pocket gophers have long curved claws on their proportionally large front limbs, and sharp curved incisors. The Olympic National Park cited as another possible location for a sizable population. The US is home to 13 breeds of pocket gopher, according to the University of Nebraska. Through automobile and aerial survey 51 known fields of inhabitance Independence of the final variable set was confirmed with Pearson correlation that showed no 2 variables had a correlation coefficient greater than 0.596. 2010). This suggests an association between T. clusius and salt desert scrub communities typically found in relatively flat areas of fine-textured saline substrates in and near the Great Divide Basin (NatureServe 2013). Wyoming Natural Diversity Database, University of Wyoming, 1000 E University Avenue, Laramie, WY 82071, USA. Gopher Habitat. They make their homes in burrows that consist of many tunnels. The CART model was cost-complexity pruned to produce the smallest tree with the lowest cross-validation error (Therneau and Atkinson 2014). A pocket gopher's ideal habitat is one withloose, sandy soil, and lots of edible plant cover, such as lawns and crop fields. Field investigation of areas predicted suitable for T. clusius, particularly areas where the 2 distribution models disagree, where there are apparent gaps in distribution, and at distributional limits, could result in worthwhile refinements to these models and to our understanding of the underlying habitat associations. The live vegetation they eat provides sufficient moisture, so pocket gophers don’t need other water sources. 5). Supporting Information S1.—List of museum specimens examined to assess field-identification characteristics for the Wyoming pocket gopher. These percentages sum to more than 100 because T. talpoides was captured in 3 quarter sections where T. clusius also was captured and 2 quarter sections where T. idahoensis was captured, suggesting that if habitat segregation occurs it could be at a fine scale. Their families have about 35 different species living across Central and North America. This variety is scientifically classified under Geomyidae. They do not use cheek pouches to carry soil. They use their sense of smell to locate food, and a female has 3 pairs of nipples to feed her babies. A pocket gopher's ideal habitat is one with loose, sandy soil, and lots of edible plant cover, such as lawns and crop fields. 2006; Williams et al. We therefore selected habitat variables that could be easily measured by inexperienced biologists and that were consistent with literature investigating habitat relationships of other North American pocket gophers (e.g., Howard and Childs 1959; Verts and Carraway 1999; Hoffman and Choate 2008; Connior et al. RF was used because it is a nonparametric, bootstrapped, ensemble classification method that implicitly resists overfitting and has been shown to be particularly robust with data structures similar to those in this study where there are large number of variables at relatively few sites (Breiman 2001; Cutler et al. Human habitation is limited in the study area, although livestock grazing at relatively low densities is widespread. For RF, importance is the mean decrease in accuracy produced by permuting the values of the input variables (Hastie et al. Potential sampling units consisted of quarter sections (standard units of the United States Public Land Survey System equivalent to 65 ha) of public land that were assessable by hiking up to 1 km from public roads. Collection of habitat data.—We collected habitat data at capture sites of T. clusius (n = 21), capture sites of T. talpoides (n = 42), and at the geographic center of quarter sections that were searched but where no visible pocket gopher activity was detected (hereafter referred to as reference sites; n = 25). Within this geographic range, T. clusius is rare compared to the more common T. talpoides, being less than half as prevalent on the landscape. Ordinate axes represent the relative effect of variables on the probability of presence of T. clusius through its range of values. This lack of data was largely caused by its cryptic, fossorial nature, which meant that time-intensive trapping and karyotyping were necessary to determine site occupation, and to the fact that its suspected range fell entirely within a remote region of Wyoming. Results indicate that T. clusius is a clearly identifiable species based on field characteristics, is uncommon throughout its limited range, and has habitat associations that separate it from the more common T. talpoides. 1). At that time it was considered a common subspecies occurring from central Colorado to southern Montana, until Thaeler and Hinesley (1979) used chromosome number to conclusively identify T. clusius as a full species restricted to a small area of south-central Wyoming (Fig. These tunnels have various uses, depending on their size. 2007). The effect-size parameter reported from MRPP analysis is A, which describes within-group homogeneity compared to the random expectation, where a value significantly greater than 0 suggests more similarity within groups than expected by chance (i.e., likely habitat selection by gophers).
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